Basic Information
Locus ID:
Sbi_jg24554
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000028l | 14370325 | 14370888 | + | Sbi_jg24554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 21,741.36 Da | 58.31 | 90.53 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 131 | 160 | 1.32778E-6 | - |
| Pfam | PF13639 | Ring finger domain | 127 | 160 | 2.2E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 167 | 1.85E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 163 | 2.2E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 78 | 159 | 3.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 78 | 160 | 9.656702 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021768552.1 | E3 ubiquitin-protein ligase ATL31-like [Chenopodium quinoa] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg24554 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11646 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73025, Sgl76565 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0874s00003.v1.0 |