Basic Information
Locus ID:
Sbi_jg2446
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
DDB1- and CUL4-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000031l | 1814042 | 1821177 | - | Sbi_jg2446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 38,789.87 Da | 31.42 | 78.75 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 220 | 2.24E-15 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 216 | 7.0E-15 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45620.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_021850724.1 | DDB1- and CUL4-associated factor 8 [Spinacia oleracea] | 0 |
| Q6NRH1 | DDB1- and CUL4-associated factor 8 OS=Xenopus laevis OX=8355 GN=dcaf8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QU62 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_141090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg17657, Sbi_jg22261, Sbi_jg2446, Sbi_jg4330 ... |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg905 |