Basic Information
Locus ID:
Sbi_jg24399
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000028l | 11863770 | 11947354 | - | Sbi_jg24399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 479,008.31 Da | 45.63 | 87.94 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1956 | 2105 | 1.6E-11 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3253 | 3421 | 2.3E-17 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 110 | 4.5E-31 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 134 | 375 | 5.3E-67 | IPR031646 |
| Pfam | PF00169 | PH domain | 795 | 905 | 1.1E-6 | IPR001849 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 554 | 774 | 1.0E-26 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2181 | 2327 | 3.5E-11 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4155 | 4230 | 2.6E-5 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 790 | 908 | 2.13E-8 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 790 | 910 | 6.1E-6 | IPR011993 |
| SMART | SM00233 | PH_update | 793 | 908 | 1.1E-5 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 792 | 906 | 9.5106 | IPR001849 |
| Coils | Coil | Coil | 108 | 128 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_019105061.2 | uncharacterized protein LOC104892878 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CD77 | PH domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g105600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology