Basic Information
Locus ID:
Sbi_jg24139
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000028l | 8097081 | 8098238 | + | Sbi_jg24139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 43,692.99 Da | 46.28 | 90.26 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 214 | 262 | 8.9E-13 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 16 | 181 | 3.2E-22 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 205 | 275 | 7.59E-19 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 209 | 278 | 2.8E-19 | IPR036638 |
| SMART | SM00353 | finulus | 219 | 268 | 7.0E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 213 | 262 | 17.758312 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 224 | - | - |
| Coils | Coil | Coil | 252 | 279 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00870.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 0 |
| RefSeq | XP_021855535.1 | transcription factor bHLH14-like [Spinacia oleracea] | 0 |
| O23090 | Transcription factor bHLH14 OS=Arabidopsis thaliana OX=3702 GN=BHLH14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L5C0 | BHLH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology