Basic Information
Locus ID:
Sbi_jg23996
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000028l | 5838894 | 5851270 | - | Sbi_jg23996 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 115,788.63 Da | 46.73 | 73.17 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 723 | 1038 | 4.27463E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 816 | 850 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 902 | 934 | 0.011 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 444 | 538 | 7.8E-8 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 451 | 543 | 6.78E-12 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 725 | 1039 | 1.97E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 701 | 1042 | 1.6E-125 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 286 | 547 | 2.2E-16 | - |
| SMART | SM00320 | WD40_4 | 768 | 807 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 713 | 757 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1003 | 1040 | 98.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 853 | 892 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 896 | 934 | 6.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 810 | 850 | 3.9E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 903 | 943 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 774 | 816 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 903 | 936 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 817 | 859 | 9.840087 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 794 | 808 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 921 | 935 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 794 | 808 | 9.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 921 | 935 | 9.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 837 | 851 | 9.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 456 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021757615.1 | protein SPA1-RELATED 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QJF8 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_178660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology