Basic Information
Locus ID:
Sbi_jg23882
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000028l | 3903041 | 3904083 | + | Sbi_jg23882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 23,244.63 Da | 44.80 | 101.73 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 11 | 74 | 6.7E-9 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 85 | 191 | 1.51E-5 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 6 | 82 | 2.14E-14 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 81 | 176 | 9.4E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 63 | 4.6E-21 | - |
| SMART | SM00219 | tyrkin_6 | 1 | 165 | 0.0015 | IPR020635 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 208 | 8.739772 | IPR000719 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23130.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 5. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_021730926.1 | cysteine-rich receptor-like protein kinase 5 [Chenopodium quinoa] | 0 |
| Q9C5S8 | Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=CRK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MST2 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg23877, Sbi_jg23880, Sbi_jg23881, Sbi_jg23882 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg12317, Seu_jg12318, Seu_jg12319, Seu_jg12322 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl43696, Sgl48465, Sgl52016, Sgl52017, Sgl52041, Sgl57319 ... |