Basic Information
Locus ID:
Sbi_jg23880
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000028l | 3883839 | 3889828 | + | Sbi_jg23880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 59,343.28 Da | 52.44 | 89.48 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 234 | 503 | 7.77583E-97 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 231 | 501 | 1.2E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 210 | 502 | 8.94E-80 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 304 | 515 | 5.9E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 191 | 303 | 3.7E-37 | - |
| SMART | SM00220 | serkin_6 | 228 | 507 | 4.3E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 228 | 503 | 37.417656 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 350 | 362 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 234 | 256 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23180.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_021743950.1 | cysteine-rich receptor-like protein kinase 10 isoform X2 [Chenopodium quinoa] | 0 |
| Q8GYA4 | Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CRK10 PE=1 SV=3 | 0 | |
| TrEMBL | A0A803MST2 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg23877, Sbi_jg23880, Sbi_jg23881, Sbi_jg23882 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg12317, Seu_jg12318, Seu_jg12319, Seu_jg12322 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl43696, Sgl48465, Sgl52016, Sgl52017, Sgl52041, Sgl57319 ... |