Basic Information
Locus ID:
Sbi_jg23779
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000028l | 2360953 | 2377310 | - | Sbi_jg23779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 77,459.56 Da | 48.89 | 84.79 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 267 | 323 | 9.49188E-27 | - |
| Pfam | PF01426 | BAH domain | 51 | 150 | 1.9E-9 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 327 | 450 | 2.1E-18 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 281 | 321 | 4.6E-9 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 191 | 639 | 4.99E-54 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 260 | 324 | 2.95E-10 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 194 | 486 | 5.5E-186 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 136 | 7.3E-28 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 487 | 629 | 5.5E-186 | - |
| SMART | SM00439 | BAH_4 | 36 | 151 | 2.6E-13 | IPR001025 |
| SMART | SM00298 | chromo_7 | 267 | 326 | 0.0036 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 36 | 151 | 17.14193 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 192 | 678 | 29.528879 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 268 | 321 | 10.711301 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 338 | 350 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 193 | 209 | 1.9E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 381 | 395 | 1.9E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 427 | 440 | 1.9E-11 | IPR001525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021765549.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RVU1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology