Basic Information
Locus ID:
Sbi_jg22972
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000018l | 16836585 | 16841446 | + | Sbi_jg22972 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 78,309.94 Da | 35.51 | 93.60 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01066 | CDP-alcohol phosphatidyltransferase | 655 | 694 | 4.0E-8 | IPR000462 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 362 | 421 | 3.6E-8 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 433 | 494 | 3.9E-13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 517 | 541 | 0.28 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 140 | 169 | 0.05 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 171 | 217 | 1.6E-13 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 427 | 577 | 2.2E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 243 | 342 | 2.3E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 78 | 229 | 1.5E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 343 | 426 | 1.3E-17 | IPR011990 |
| Gene3D | G3DSA:1.20.120.1760 | - | 641 | 697 | 4.9E-10 | IPR043130 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 379 | 410 | 4.7E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 412 | 445 | 3.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 174 | 207 | 1.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 447 | 480 | 8.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 517 | 550 | 0.0011 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 482 | 516 | 2.7E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 445 | 479 | 9.821383 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 515 | 549 | 9.898111 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 410 | 444 | 10.314641 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 375 | 409 | 9.909073 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 137 | 171 | 9.054091 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 340 | 374 | 8.736214 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 480 | 514 | 9.777537 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 172 | 206 | 12.660359 | IPR002885 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46610.1 | Pentatricopeptide repeat (PPR-like) superfamily protein. | 0 |
| RefSeq | XP_021739665.1 | pentatricopeptide repeat-containing protein At3g46610-like [Chenopodium quinoa] | 0 |
| Q9SNB7 | Protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MVS1 | PPR_long domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40424 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033485 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20796, Sbi_jg22972 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16838 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009313 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62017, Sgl66577 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017802, gene:ENSEOMG00000050375 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0011360, CQ.Regalona.r1.2BG0012800 |
| Apiaceae | Apium graveolens | 1 | Ag4G00732 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G013270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720303 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1240.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G07846 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G46610.1, AT5G14350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015672m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g29690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g006900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1931 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g00370 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g23380 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.226 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013537 |
| Poaceae | Echinochloa crus-galli | 1 | AH05.3235 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0387480, gene-QOZ80_5BG0434960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0304630.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020125, gene-QYE76_020148 |
| Poaceae | Oryza coarctata | 1 | Oco24G004500 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g18640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G152400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr19G014360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G618700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG055680, gene_TRIDC3BG062340 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G390700.1.cds1, TraesCS3B02G422500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb273000_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12429 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25711 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1426 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g01540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.62 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14873 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-589 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.16 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007091 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21510 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17529 |
| Salicaceae | Populus euphratica | 2 | populus_peu01148, populus_peu24410 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621413 |
| Solanaceae | Solanum chilense | 1 | SOLCI000010500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011328 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25692_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1277 |
| Zosteraceae | Zostera marina | 1 | Zosma02g09460.v3.1 |