Basic Information
Locus ID:
Sbi_jg22969
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Proteinaceous RNase P 1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000018l | 16800206 | 16801993 | + | Sbi_jg22969 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 63,354.66 Da | 41.27 | 80.91 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 95 | 268 | 1.3E-55 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 324 | 550 | 3.9E-69 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 381 | 523 | 4.7E-21 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 101 | 376 | 2.3E-67 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 185 | 219 | 9.152743 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 88 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_010669732.2 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8FP36 | ribonuclease P OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_2g036660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology