Basic Information
Locus ID:
Sbi_jg22891
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000018l | 15299468 | 15305482 | - | Sbi_jg22891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 54,890.40 Da | 51.70 | 94.15 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13976 | GAG-pre-integrase domain | 295 | 345 | 9.6E-9 | IPR025724 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 357 | 419 | 2.09E-7 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 352 | 430 | 1.5E-8 | IPR036397 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 108 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_033129771.1 | uncharacterized protein LOC103872007 isoform X1 [Brassica rapa] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A438H6Z3 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology