halophFGD

Basic Information

Locus ID: Sbi_jg22873

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: PolyA polymerase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000018l	14642476	14655852	-	Sbi_jg22873

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.30	88,960.35 Da	46.70	77.24	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05402	NT_PAP_TUTase	65	220	4.55345E-27	-
Pfam	PF04926	Poly(A) polymerase predicted RNA binding domain	432	506	1.3E-7	IPR007010
Pfam	PF04928	Poly(A) polymerase central domain	26	369	2.5E-108	IPR007012
Pfam	PF04926	Poly(A) polymerase predicted RNA binding domain	373	430	2.1E-10	IPR007010
Pfam	PF01909	Nucleotidyltransferase domain	99	172	6.3E-9	IPR002934
SUPERFAMILY	SSF81631	PAP/OAS1 substrate-binding domain	221	369	4.19E-64	-
SUPERFAMILY	SSF55003	PAP/Archaeal CCA-adding enzyme, C-terminal domain	373	499	6.28E-37	IPR011068
SUPERFAMILY	SSF81301	Nucleotidyltransferase	25	219	1.23E-50	IPR043519
Gene3D	G3DSA:3.30.460.10	Beta Polymerase, domain 2	58	214	4.9E-155	IPR043519
Gene3D	G3DSA:1.10.1410.10	-	26	368	4.9E-155	-
Gene3D	G3DSA:3.30.70.590	Poly(A) polymerase predicted RNA binding domain	373	488	2.4E-27	-
MobiDBLite	mobidb-lite	consensus disorder prediction	515	546	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	515	559	-	-
Coils	Coil	Coil	773	791	-	-

Gene Ontology

Biological Process:

GO:0031123 (RNA 3'-end processing)

Molecular Function:

GO:0003723 (RNA binding) GO:0016779 (nucleotidyltransferase activity) GO:1990817 (poly(A) RNA polymerase activity)

KEGG Pathway

KO Term:

K14376 (poly(A) polymerase [EC:2.7.7.19])

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G32850.7	nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus.
RefSeq	XP_021776422.1	LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Chenopodium quinoa]
Swiss-Prot	Q8VYW1	Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1
TrEMBL	A0A803N4A6	polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg18103, jg25283, jg25284, jg28122, jg469, jg5222, jg7289
Aizoaceae	Mesembryanthemum crystallinum	5	gene_13210, gene_14141, gene_15885, gene_18528, gene_26095
Amaranthaceae	Atriplex hortensis	6	Ah011036, Ah014051, Ah019288, Ah021154, Ah022207, Ah035065
Amaranthaceae	Beta vulgaris	4	BVRB_2g032820, BVRB_3g054560, BVRB_3g056860, BVRB_3g063260
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg11293, Sbi_jg15275, Sbi_jg20911, Sbi_jg22873 ... Sbi_jg46258, Sbi_jg56085, Sbi_jg58896, Sbi_jg63713, Sbi_jg63714
Amaranthaceae	Salicornia europaea	5	Seu_jg16736, Seu_jg20590, Seu_jg23180, Seu_jg25358 ... Seu_jg26573
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00005379, GOSA_00006266, GOSA_00012970, GOSA_00018165
Amaranthaceae	Suaeda glauca	12	Sgl01647, Sgl01668, Sgl02301, Sgl06821, Sgl07453, Sgl56272 ... Sgl61781, Sgl62290, Sgl66837, Sgl71108, Sgl74681, Sgl74687
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000003897, gene:ENSEOMG00000014834 ... gene:ENSEOMG00000015256, gene:ENSEOMG00000019205, gene:ENSEOMG00000022646, gene:ENSEOMG00000024898, gene:ENSEOMG00000031681, gene:ENSEOMG00000037384, gene:ENSEOMG00000044604, gene:ENSEOMG00000045218, gene:ENSEOMG00000049574, gene:ENSEOMG00000049896, gene:ENSEOMG00000052335
Amaranthaceae	Chenopodium quinoa	11	CQ.Regalona.r1.2AG0015010, CQ.Regalona.r1.2BG0017110 ... CQ.Regalona.r1.3AG0023250, CQ.Regalona.r1.3BG0000130, CQ.Regalona.r1.3BG0023980, CQ.Regalona.r1.4BG0012610, CQ.Regalona.r1.6AG0001750, CQ.Regalona.r1.6BG0001840, CQ.Regalona.r1.6BG0011950, CQ.Regalona.r1.9AG0012120, CQ.Regalona.r1.9BG0010300
Anacardiaceae	Pistacia vera	5	pistato.v30123110, pistato.v30147090, pistato.v30147100 ... pistato.v30232830, pistato.v30254140
Apiaceae	Apium graveolens	4	Ag3G00966, Ag5G00877, Ag6G01436, Ag9G00520
Arecaceae	Cocos nucifera	6	COCNU_02G001080, COCNU_03G009580, COCNU_03G014690 ... COCNU_04G011360, COCNU_16G004790, scaffold005650G000020
Arecaceae	Phoenix dactylifera	5	gene-LOC103696079, gene-LOC103696098, gene-LOC103709667 ... gene-LOC103710229, gene-LOC103713411
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.2835.V1.1, AsparagusV1_05.1718.V1.1 ... AsparagusV1_05.202.V1.1, AsparagusV1_05.2677.V1.1, AsparagusV1_08.2370.V1.1, AsparagusV1_08.2959.V1.1
Asteraceae	Flaveria trinervia	7	Ftri10G11922, Ftri16G06532, Ftri18G07415, Ftri1G05527 ... Ftri2G02531, Ftri4G17254, Ftri7G27255
Brassicaceae	Arabidopsis thaliana	5	AT1G17980.1, AT2G25850.2, AT3G06560.1, AT4G32850.8 ... AT5G02670.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001908m.g.v1.0, Thhalv10006945m.g.v1.0 ... Thhalv10024486m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g16040.v2.2, Sp2g12720.v2.2, Sp2g21980.v2.2 ... Sp3g05500.v2.2, Sp4g05670.v2.2, Sp7g30620.v2.2
Brassicaceae	Brassica nigra	6	BniB01g017610.2N, BniB01g057100.2N, BniB02g064620.2N ... BniB03g007400.2N, BniB03g027850.2N, BniB05g005180.2N
Casuarinaceae	Casuarina equisetifolia	11	Ceq02G1251, Ceq02G1252, Ceq03G2454, Ceq04G0854, Ceq04G0855 ... Ceq04G1101, Ceq04G1102, Ceq04G2062, Ceq05G0356, Ceq09G1005, Ceq09G1013
Casuarinaceae	Casuarina glauca	16	Cgl02G1292, Cgl03G2598, Cgl04G0960, Cgl04G0966, Cgl04G0967 ... Cgl04G0970, Cgl04G0972, Cgl04G1247, Cgl04G1257, Cgl04G1262, Cgl04G1269, Cgl04G1878, Cgl04G2256, Cgl05G0372, Cgl09G1103, Cgl09G1105
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g05390, gene.Cymno11g02300
Dunaliellaceae	Dunaliella salina	1	Dusal.1100s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g34380, gene.Thate03g00080, gene.Thate07g16850
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.269, evm.TU.LG07.841, evm.TU.LG10.288 ... evm.TU.LG11.1164
Plantaginaceae	Plantago ovata	7	Pov_00013927, Pov_00013928, Pov_00022565, Pov_00025752 ... Pov_00033602, Pov_00036582, Pov_00040323
Plumbaginaceae	Limonium bicolor	2	Lb3G19368, Lb4G26322
Poaceae	Echinochloa crus-galli	24	AH01.3846, AH03.3936, AH03.4111, AH06.2013, AH07.657 ... AH07.913, AH09.2101, BH01.4188, BH01.4189, BH03.4226, BH03.4446, BH06.1843, BH07.1034, BH07.3197, BH07.778, BH09.2266, CH01.1569, CH01.4476, CH06.2041, CH07.268, CH07.67, CH07.799, CH08.1147, CH09.2411
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0106870, gene-QOZ80_2BG0160460 ... gene-QOZ80_3AG0238270, gene-QOZ80_3BG0282200, gene-QOZ80_3BG0289790, gene-QOZ80_5AG0378260, gene-QOZ80_5BG0425350, gene-QOZ80_6AG0542850, gene-QOZ80_6BG0496070, gene-QOZ80_7BG0613390
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.2HG0110140.1, HORVU.MOREX.r3.4HG0340660.1 ... HORVU.MOREX.r3.2HG0172810.1.CDS1, HORVU.MOREX.r3.2HG0196750.1.CDS1, HORVU.MOREX.r3.2HG0196810.1.CDS1, HORVU.MOREX.r3.4HG0343100.1.CDS1, HORVU.MOREX.r3.4HG0381380.1, HORVU.MOREX.r3.6HG0581010.1, HORVU.MOREX.r3.7HG0717970.1
Poaceae	Lolium multiflorum	7	gene-QYE76_014011, gene-QYE76_021773, gene-QYE76_034453 ... gene-QYE76_045837, gene-QYE76_050331, gene-QYE76_059189, gene-QYE76_062106
Poaceae	Oryza coarctata	10	Oco03G006060, Oco06G014570, Oco07G014390, Oco08G013860 ... Oco11G008240, Oco11G011140, Oco12G008270, Oco12G011250, Oco13G016400, Oco14G017220
Poaceae	Oryza sativa	7	LOC_Os01g50730.1, LOC_Os02g13400.2, LOC_Os03g19920.1 ... LOC_Os04g49870.1, LOC_Os06g21470.1, LOC_Os06g36360.2, LOC_Os07g48890.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G134900, gene-BS78_01G374200 ... gene-BS78_02G394900, gene-BS78_04G094000, gene-BS78_06G207200, gene-BS78_10G165600
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0102598, Pt_Chr0107068, Pt_Chr0107533, Pt_Chr0206344 ... Pt_Chr0301572, Pt_Chr0305374, Pt_Chr0306571, Pt_Chr0400442, Pt_Chr0400453, Pt_Chr0603516
Poaceae	Sporobolus alterniflorus	15	Chr01G022420, Chr01G033150, Chr02G028950, Chr05G006610 ... Chr06G032430, Chr0G009930, Chr10G016410, Chr11G006030, Chr12G006430, Chr15G023830, Chr23G017310, Chr24G012050, Chr26G002540, Chr26G014220, Chr28G013470
Poaceae	Thinopyrum elongatum	12	Tel2E01G162800, Tel2E01G209300, Tel2E01G314500 ... Tel2E01G563800, Tel2E01G564000, Tel2E01G767300, Tel4E01G110800, Tel4E01G325200, Tel5E01G176000, Tel5E01G176100, Tel6E01G385700, Tel7E01G625500
Poaceae	Triticum dicoccoides	18	gene_TRIDC1BG066940, gene_TRIDC2AG008160 ... gene_TRIDC2AG011180, gene_TRIDC2AG047070, gene_TRIDC2AG064480, gene_TRIDC2BG013720, gene_TRIDC2BG049620, gene_TRIDC2BG068780, gene_TRIDC2BG068810, gene_TRIDC4AG016700, gene_TRIDC4AG038820, gene_TRIDC4BG010480, gene_TRIDC4BG034140, gene_TRIDC5AG013730, gene_TRIDC6AG028610, gene_TRIDC6BG035050, gene_TRIDC7AG049910, gene_TRIDC7BG043880
Poaceae	Triticum aestivum	27	TraesCS2A02G073200.1, TraesCS2A02G096500.1 ... TraesCS2A02G342300.1.cds1, TraesCS2A02G451700.1.cds1, TraesCS2A02G451800.1.cds1, TraesCS2B02G112000.1, TraesCS2B02G340000.1.cds1, TraesCS2B02G473300.1.cds1, TraesCS2B02G473400.1.cds1, TraesCS2D02G095000.1, TraesCS2D02G319900.1.cds1, TraesCS2D02G320700.1.cds1, TraesCS2D02G451500.1.cds1, TraesCS3D02G006700.1, TraesCS4A02G123900.1, TraesCS4A02G246800.1, TraesCS4B02G068100.1, TraesCS4B02G180500.1, TraesCS4D02G067100.1, TraesCS4D02G182000.1, TraesCS6A02G191200.1, TraesCS6B02G219800.3, TraesCS6D02G174400.1, TraesCS7A02G357100.1, TraesCS7B02G270600.4, TraesCS7D02G365600.4, TraesCSU02G155200.1.cds1
Poaceae	Zea mays	19	Zm00001eb015030_P004, Zm00001eb034770_P001 ... Zm00001eb052460_P002, Zm00001eb072530_P001, Zm00001eb104080_P001, Zm00001eb126480_P001, Zm00001eb161150_P001, Zm00001eb161240_P001, Zm00001eb176100_P001, Zm00001eb205010_P001, Zm00001eb217900_P001, Zm00001eb237990_P001, Zm00001eb277450_P002, Zm00001eb291230_P001, Zm00001eb293140_P002, Zm00001eb331120_P001, Zm00001eb355230_P001, Zm00001eb384370_P005, Zm00001eb395840_P001
Poaceae	Zoysia japonica	7	nbis-gene-10223, nbis-gene-1811, nbis-gene-34275 ... nbis-gene-41196, nbis-gene-42112, nbis-gene-53, nbis-gene-55090
Poaceae	Zoysia macrostachya	6	Zma_g1347, Zma_g15445, Zma_g28066, Zma_g30698, Zma_g32942 ... Zma_g7104
Portulacaceae	Portulaca oleracea	13	evm.TU.LG01.2271, evm.TU.LG05.1362, evm.TU.LG07.1510 ... evm.TU.LG07.1640, evm.TU.LG07.726, evm.TU.LG11.1297, evm.TU.LG13.760, evm.TU.LG13.761, evm.TU.LG14.1444, evm.TU.LG15.1600, evm.TU.LG15.211, evm.TU.LG21.440, evm.TU.LG21.441
Posidoniaceae	Posidonia oceanica	6	gene.Posoc03g21910, gene.Posoc03g21920, gene.Posoc03g21930 ... gene.Posoc04g04190, gene.Posoc06g21880, gene.Posoc08g12520
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.1310 ... evm.TU.Scaffold_11_RagTag.705, evm.TU.Scaffold_18_RagTag.601, evm.TU.Scaffold_18_RagTag.602
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-13740, nbisL1-mrna-13743, nbisL1-mrna-14316 ... nbisL1-mrna-7043
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4313, nbisL1-mrna-8048
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12315, nbisL1-mrna-8803
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.97, evm.TU.utg000005l.11 ... evm.TU.utg000023l.105
Rhizophoraceae	Kandelia obovata	4	Maker00001280, Maker00004213, Maker00008647, Maker00018994
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16421, nbisL1-mrna-7387, nbisL1-mrna-959
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17960, nbisL1-mrna-21352, nbisL1-mrna-8375
Salicaceae	Populus euphratica	5	populus_peu04985, populus_peu06865, populus_peu12718 ... populus_peu28459, populus_peu28460
Solanaceae	Lycium barbarum	6	gene-LOC132602677, gene-LOC132604219, gene-LOC132626743 ... gene-LOC132635844, gene-LOC132641679, gene-LOC132645829
Solanaceae	Solanum chilense	4	SOLCI001025900, SOLCI001548900, SOLCI002706700 ... SOLCI005823800
Solanaceae	Solanum pennellii	6	gene-LOC107005807, gene-LOC107007104, gene-LOC107007813 ... gene-LOC107020467, gene-LOC107023221, gene-LOC107027905
Tamaricaceae	Reaumuria soongarica	3	gene_10058, gene_12468, gene_3126
Tamaricaceae	Tamarix chinensis	3	TC01G2577, TC08G1902, TC12G1845
Zosteraceae	Zostera marina	2	Zosma03g03770.v3.1, Zosma03g24430.v3.1