Basic Information
Locus ID:
Sbi_jg22591
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000018l | 9448021 | 9451598 | + | Sbi_jg22591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 55,470.55 Da | 47.87 | 71.93 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 207 | 483 | 4.92271E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 483 | 8.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 318 | 353 | 3.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 358 | 398 | 3.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 270 | 0.27 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 183 | 484 | 1.71E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 143 | 485 | 2.3E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 401 | 441 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 353 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 398 | 8.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 270 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 310 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 186 | 227 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 483 | 1.1E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 321 | 362 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 363 | 407 | 9.739832 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 321 | 353 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 238 | 279 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 451 | 484 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 451 | 484 | 14.184453 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 385 | 399 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 189 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_010690812.2 | protein FIZZY-RELATED 3 [Beta vulgaris subsp. vulgaris] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S028 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology