Basic Information
Locus ID:
Sbi_jg22463
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Phd finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000018l | 7210905 | 7221078 | + | Sbi_jg22463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 16,238.63 Da | 26.13 | 77.75 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12998 | Inhibitor of growth proteins N-terminal histone-binding | 8 | 40 | 1.4E-6 | IPR024610 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 104 | 140 | 2.88E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 147 | 1.6E-19 | IPR013083 |
| Gene3D | G3DSA:6.10.140.1740 | - | 3 | 39 | 5.0E-8 | - |
| SMART | SM00249 | PHD_3 | 102 | 138 | 8.2E-4 | IPR001965 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 88 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24010.1 | RING/FYVE/PHD zinc finger superfamily protein. ING1 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_021726842.1 | PHD finger protein ING1-like [Chenopodium quinoa] | 0 |
| Q9LIQ6 | PHD finger protein ING1 OS=Arabidopsis thaliana OX=3702 GN=ING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M3P9 | PHD finger protein ING OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12800 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4420 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035273 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g024140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21388, Sbi_jg22463 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16342 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016424 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62362, Sgl66899 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020502, gene:ENSEOMG00000022913 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0019510, CQ.Regalona.r1.2AG0021210 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30240440 |
| Apiaceae | Apium graveolens | 1 | AgUnG00382 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G009210, COCNU_10G007100 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697035, gene-LOC103723698, gene-LOC120103707 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G24489, Ftri12G25407 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002653m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g21950.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g037150.2N, BniB04g017260.2N, BniB04g026260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0214 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0206 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g10140 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0237s00004.v1.0, Dusal.0237s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g05870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4963, nbisL1-mrna-5406 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.666 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022005 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20574 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.5274, CH01.5540 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0233440, gene-QOZ80_3BG0294520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0407110.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070854 |
| Poaceae | Oryza coarctata | 2 | Oco05G002670, Oco06G002620 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g04980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G484100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100106, Pt_Chr0100219 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G037520, Chr07G006890, Chr07G006900, Chr12G001900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G512100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG052480 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G409000.2, TraesCS4B02G307800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb402910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2930, nbis-gene-4525 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2091, Zma_g4436 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.999, evm.TU.LG21.661 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g12130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.943 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15731 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.589 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007884 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15173 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4336 |
| Salicaceae | Populus euphratica | 1 | populus_peu34856 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610699 |
| Solanaceae | Solanum chilense | 1 | SOLCI005009500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029504 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16613_chr09_+, STRG.19297_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0310 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23020.v3.1 |