Basic Information
Locus ID:
Sbi_jg22426
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Aspartic proteinase CDR1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000018l | 6639270 | 6640637 | + | Sbi_jg22426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 49,076.74 Da | 32.43 | 82.04 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05476 | pepsin_A_like_plant | 96 | 451 | 6.54435E-81 | IPR034161 |
| Pfam | PF14541 | Xylanase inhibitor C-terminal | 294 | 445 | 8.5E-24 | IPR032799 |
| Pfam | PF14543 | Xylanase inhibitor N-terminal | 97 | 271 | 3.5E-54 | IPR032861 |
| SUPERFAMILY | SSF50630 | Acid proteases | 92 | 451 | 7.14E-89 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 74 | 271 | 1.6E-52 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 272 | 454 | 7.2E-44 | IPR021109 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 97 | 447 | 40.754242 | IPR033121 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 333 | 344 | - | IPR001969 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 112 | 123 | - | IPR001969 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G33340.1 | Eukaryotic aspartyl protease family protein. Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation. | 0 |
| RefSeq | XP_010666175.3 | aspartic proteinase CDR1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6XBF8 | Aspartic proteinase CDR1 OS=Arabidopsis thaliana OX=3702 GN=CDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QT63 | Peptidase A1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_144280 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology