Basic Information
Locus ID:
Sbi_jg21888
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 82856203 | 82862778 | - | Sbi_jg21888 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 41,698.08 Da | 47.77 | 80.65 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 7.55692E-28 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 143 | 192 | 3.80913E-31 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.2E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 149 | 187 | 1.3E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 348 | 383 | 6.4E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 266 | 321 | 1.3E-22 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 324 | 394 | 7.3E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 86 | 5.99E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 263 | 327 | 5.23E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 146 | 199 | 2.43E-11 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.5E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 341 | 388 | 7.5E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 142 | 192 | 1.4E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 257 | 322 | 3.4E-27 | IPR036353 |
| SMART | SM00165 | uba_6 | 149 | 189 | 9.5E-5 | IPR015940 |
| SMART | SM00727 | CBM | 262 | 307 | 1.5E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.0E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 348 | 385 | 1.2E-7 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 390 | 4.9E-111 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.542631 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 147 | 190 | 12.257729 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 345 | 386 | 13.896332 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 342 | 358 | 3.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 374 | 389 | 3.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 292 | 314 | 3.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 373 | 3.4E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 125 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010692904.1 | ubiquitin receptor RAD23d isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803M4E8 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology