Basic Information
Locus ID:
Sbi_jg21701
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 80304967 | 80306334 | + | Sbi_jg21701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 50,853.57 Da | 46.69 | 73.58 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 369 | 410 | 1.24164E-21 | - |
| Pfam | PF13639 | Ring finger domain | 369 | 410 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 350 | 416 | 7.07E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 330 | 416 | 1.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 369 | 409 | 4.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 369 | 410 | 12.681067 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021739349.1 | E3 ubiquitin ligase BIG BROTHER-related-like [Chenopodium quinoa] | 0 |
| Q5M974 | E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LC57 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23677 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035655 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21701, Sbi_jg22112 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16040 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008659 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl67581 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000019226, gene:ENSEOMG00000019554 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017770, CQ.Regalona.r1.2BG0019330 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.706, evm.TU.LG10.1128, evm.TU.LG11.84 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16640_chr08_-, STRG.2099_chr01_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0103, TC05G1336 |