Basic Information
Locus ID:
Sbi_jg20936
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Probably inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 68358455 | 68363086 | + | Sbi_jg20936 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 107,418.26 Da | 31.00 | 101.75 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 370 | 391 | 0.069 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 154 | 213 | 1.7E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 489 | 548 | 1.2E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 71 | 1.9E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 250 | 309 | 3.4E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 735 | 900 | 3.6E-13 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 724 | 968 | 6.93E-27 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 43 | 362 | 2.11E-60 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 289 | 598 | 3.61E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 359 | 629 | 8.8E-74 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 196 | 5.9E-44 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 202 | 358 | 2.5E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 779 | 973 | 3.2E-27 | - |
| SMART | SM00220 | serkin_6 | 706 | 967 | 2.8E-4 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 370 | 392 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 104 | 128 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 511 | 535 | 95.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 176 | 200 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 559 | 583 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 248 | 271 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 224 | 247 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 272 | 296 | 5.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 344 | 368 | 36.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 686 | 966 | 16.555874 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25790.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_021737293.1 | probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Chenopodium quinoa] | 0 |
| O82318 | Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1 OS=Arabidopsis thaliana OX=3702 GN=SKM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N965 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23885, jg36707 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13219 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035005 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g032540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20936, Sbi_jg22850 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16709 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018184 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62272, Sgl66821 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016543, gene:ENSEOMG00000049877 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0015390, CQ.Regalona.r1.2BG0017440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253900 |
| Apiaceae | Apium graveolens | 1 | Ag6G01296 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G000730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710284 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G20857 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G25790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001899m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g05550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g032710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2072 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2266 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.823 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26328 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2316, evm.TU.LG07.1081 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.760 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13731 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4706 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9003 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.531 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014658 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3854 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7965 |
| Salicaceae | Populus euphratica | 3 | populus_peu04928, populus_peu05268, populus_peu12734 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635824 |
| Solanaceae | Solanum chilense | 1 | SOLCI003797100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028778 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4745_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1768 |