Basic Information
Locus ID:
Sbi_jg20793
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 66193066 | 66194412 | - | Sbi_jg20793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 50,578.79 Da | 46.81 | 80.33 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 388 | 448 | 7.52961E-9 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 118 | 209 | 5.6E-14 | IPR005162 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 380 | 448 | 3.1E-5 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 399 | 410 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 303 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021773518.1 | uncharacterized protein LOC110737466 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N5L5 | Retrotrans_gag domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 38 | Sbi_jg11007, Sbi_jg11359, Sbi_jg11360, Sbi_jg13582 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15426, Seu_jg18148 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g06310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.678, evm.TU.Scaffold_3_RagTag.1025 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21800 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1437 |