Basic Information
Locus ID:
Sbi_jg20681
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
PRK1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 63774412 | 63787974 | + | Sbi_jg20681 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 91,329.88 Da | 45.48 | 79.83 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01920 | Prefoldin subunit | 711 | 813 | 3.0E-17 | IPR002777 |
| Pfam | PF13855 | Leucine rich repeat | 131 | 188 | 7.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 76 | 6.5E-12 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 385 | 642 | 2.3E-30 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 385 | 647 | 4.07E-46 | IPR011009 |
| SUPERFAMILY | SSF46579 | Prefoldin | 707 | 812 | 1.06E-19 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 237 | 3.78E-31 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 356 | 455 | 1.6E-16 | - |
| Gene3D | G3DSA:1.10.287.370 | - | 705 | 815 | 1.1E-13 | IPR009053 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 196 | 242 | 2.6E-6 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 457 | 658 | 4.5E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 195 | 5.6E-41 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 381 | 657 | 25.022139 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 273 | - | - |
| Coils | Coil | Coil | 772 | 813 | - | - |
| Coils | Coil | Coil | 715 | 735 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G07040.1 | Leucine-rich repeat protein kinase family protein. Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth. | 0 |
| RefSeq | XP_021715870.1 | pollen receptor-like kinase 1 [Chenopodium quinoa] | 0 |
| Q84JQ4 | Pollen receptor-like kinase 2 OS=Arabidopsis thaliana OX=3702 GN=PRK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MET9 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32819 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7983 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034068 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035980 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20681, Sbi_jg23073 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16939 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009244 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63393, Sgl67873 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016954, gene:ENSEOMG00000017806 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0012310, CQ.Regalona.r1.2BG0013830 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30283870 |
| Apiaceae | Apium graveolens | 1 | Ag10G02379 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714095 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.48.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G16214 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G07340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015026m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g13890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g029060.2N, BniB08g017660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2667 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2801 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0357s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.588 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039508 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31085 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.1680, BH07.1665, BH07.1686, CH07.1516 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0130260, gene-QOZ80_2BG0185500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0150100.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053662, gene-QYE76_056678 |
| Poaceae | Oryza coarctata | 2 | Oco03G009680, Oco04G010030 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g26440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G374800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601321, Pt_Chr0601348 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G011910, Chr09G016460, Chr13G013240, Chr15G013660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G461500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG033860, gene_TRIDC2BG038570 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G247800.1, TraesCS2B02G269400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb240760_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19058, nbis-gene-21018 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13489, Zma_g16300 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.136, evm.TU.LG15.13 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g14520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2346 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10486 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5085 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1381 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000790 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1798 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22375 |
| Salicaceae | Populus euphratica | 1 | populus_peu11241 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616728 |
| Solanaceae | Solanum chilense | 1 | SOLCI002499600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023970 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_18021 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26800.v3.1 |