Basic Information
Locus ID:
Sbi_jg2012
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 67335200 | 67344246 | - | Sbi_jg2012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 46,050.15 Da | 45.43 | 65.87 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 1.76959E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 6.22623E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 4.96653E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 9.9E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 325 | 7.5E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 1.6E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 219 | 4.03E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 251 | 341 | 6.92E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 4.84E-24 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 134 | 232 | 1.6E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 133 | 2.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 234 | 339 | 1.9E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 4.0E-15 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 139 | 212 | 0.0085 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 3.7E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 6.6E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.1357 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 16.909462 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.726371 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021720428.1 | oligouridylate-binding protein 1B-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KQY9 | Oligouridylate-binding protein 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology