Basic Information
Locus ID:
Sbi_jg19648
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 13840866 | 13841627 | - | Sbi_jg19648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 29,427.82 Da | 54.93 | 60.83 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 138 | 180 | 2.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 128 | 189 | 1.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 186 | 1.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 179 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 180 | 11.884405 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68180.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010669932.2 | uncharacterized RING finger protein P32A8.03c [Beta vulgaris subsp. vulgaris] | 0 |
| Q6DIP3 | E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N5U4 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12907 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah033634, Ah033635 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g037760 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19648, Sbi_jg44533 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17387 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024057 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl21201, Sgl26540, Sgl63713, Sgl68214 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000020524 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0009950, CQ.Regalona.r1.2BG0011810 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G05704 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G68180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019221m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g23180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g045510.2N, BniB05g064720.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002026 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2006, evm.TU.LG06.323 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.9439_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3598 |