Basic Information
Locus ID:
Sbi_jg19613
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 12347510 | 12349449 | - | Sbi_jg19613 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 11,159.72 Da | 27.00 | 100.29 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 14 | 104 | 3.74E-11 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 40 | 105 | 2.0E-5 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 3 | 39 | 1.1E-9 | IPR036188 |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14220.1 | Flavin containing amine oxidoreductase family. Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology. Also known as MEE61 (maternal effect embryo arrest 61). mee61 mutant shows arrested endosperm development. | 0 |
| RefSeq | XP_021775105.1 | protoporphyrinogen oxidase, chloroplastic/mitochondrial-like [Chenopodium quinoa] | 0 |
| Q94IG7 | Protoporphyrinogen oxidase 2 OS=Spinacia oleracea OX=3562 GN=POX2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MZB1 | Protoporphyrinogen oxidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg15606, Sbi_jg19613, Sbi_jg27518, Sbi_jg53453 ... |
| Apiaceae | Apium graveolens | 1 | Ag7G01434 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1484.V1.1, AsparagusV1_04.2628.V1.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb058250_P001 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.22 |