Basic Information
Locus ID:
Sbi_jg19526
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 8075323 | 8098260 | - | Sbi_jg19526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 220,712.81 Da | 43.37 | 72.95 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 1049 | 1145 | 2.98726E-44 | - |
| CDD | cd13999 | STKc_MAP3K-like | 1712 | 1969 | 2.14715E-107 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1707 | 1968 | 3.2E-61 | IPR001245 |
| Pfam | PF11861 | Domain of unknown function (DUF3381) | 235 | 401 | 1.4E-40 | IPR024576 |
| Pfam | PF00564 | PB1 domain | 1062 | 1146 | 4.6E-20 | IPR000270 |
| Pfam | PF01728 | FtsJ-like methyltransferase | 22 | 200 | 2.8E-50 | IPR002877 |
| Pfam | PF07780 | Spb1 C-terminal domain | 624 | 819 | 9.4E-53 | IPR012920 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1689 | 1966 | 7.06E-76 | IPR011009 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 21 | 202 | 9.12E-31 | IPR029063 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 1061 | 1150 | 2.26E-22 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 19 | 208 | 6.4E-59 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1064 | 1147 | 7.9E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1794 | 1984 | 5.3E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1699 | 1793 | 2.0E-25 | - |
| SMART | SM00220 | serkin_6 | 1706 | 1973 | 2.4E-58 | IPR000719 |
| SMART | SM00666 | PB1_new | 1060 | 1147 | 5.4E-34 | IPR000270 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 1045 | 1147 | 11.42153 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1706 | 1987 | 40.202057 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1831 | 1843 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1712 | 1737 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1788 | 1801 | 8.2E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1896 | 1918 | 8.2E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1825 | 1843 | 8.2E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1940 | 1962 | 8.2E-11 | IPR001245 |
| Hamap | MF_03163 | AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. | 1 | 826 | 19.833279 | IPR028589 |
| Hamap | MF_01547 | Ribosomal RNA large subunit methyltransferase E [rlmE]. | 6 | 202 | 28.674076 | IPR015507 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 585 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 867 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 853 | 867 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 656 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 804 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1289 | 1320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 845 | - | - |
| Coils | Coil | Coil | 356 | 393 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_021865717.1 | uncharacterized protein LOC110804430 [Spinacia oleracea] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q7Z2 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_209860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26204, jg40568 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7747 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028898 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19526, Sbi_jg44087 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17885 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014542 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl41813, Sgl46611, Sgl51098, Sgl56406 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000017896, gene:ENSEOMG00000019354 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0010210, CQ.Regalona.r1.2BG0010940 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30114880, pistato.v30121440 |
| Apiaceae | Apium graveolens | 1 | Ag6G02571 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G007140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720214 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1083.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G08930 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024417m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g082090.2N, BniB05g055680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0194 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05350 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0355s00010.v1.0, Dusal.0355s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g10450, gene.Thate08g10880 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9629 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.153 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005791 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G16704, Lb3G16705, Lb3G17267 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1364, BH05.1536, CH05.1738 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0362790, gene-QOZ80_5BG0410950 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0079400.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 9 | gene-QYE76_007213, gene-QYE76_007214, gene-QYE76_007217 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G017000, Oco10G016910 |
| Poaceae | Oryza sativa | 3 | LOC_Os05g49230.1, LOC_Os09g27270.1, LOC_Os10g42404.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G238900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0502978, Pt_Chr0505637, Pt_Chr0700738 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G015760, Chr12G020970, Chr18G016750, Chr22G001030 |
| Poaceae | Thinopyrum elongatum | 6 | Tel1E01G597500, Tel1E01G597800, Tel1E01G597900 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG053970, gene_TRIDC1AG059670 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G404700.1, TraesCS1B02G434500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb296160_P001, Zm00001eb343980_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13631 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27400 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2508, evm.TU.LG08.176 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g13900, gene.Posoc07g09810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2259 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14085 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3293 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.105 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016388 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4664 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22404 |
| Salicaceae | Populus euphratica | 1 | populus_peu36497 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626953 |
| Solanaceae | Solanum chilense | 1 | SOLCI003696800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002312, gene-LOC107002354, gene-LOC107004744 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7833 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0458 |
| Zosteraceae | Zostera marina | 2 | Zosma04g24150.v3.1, Zosma04g24180.v3.1 |