Basic Information
Locus ID:
Sbi_jg19360
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 2504504 | 2505987 | + | Sbi_jg19360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 43,653.46 Da | 58.02 | 57.99 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 328 | 369 | 9.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 327 | 372 | 8.01E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 297 | 373 | 1.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 368 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 369 | 12.902362 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 221 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021746133.1 | probable E3 ubiquitin-protein ligase HIP1 [Chenopodium quinoa] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6VF03 | E3 ubiquitin-protein ligase MBR1-like OS=Gossypium australe OX=47621 GN=EPI10_002692 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19360, Sbi_jg43938 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18002, Seu_jg18003 |