Basic Information
Locus ID:
Sbi_jg19152
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000025l | 24230236 | 24240729 | - | Sbi_jg19152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 69,178.67 Da | 47.72 | 66.10 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 373 | 502 | 3.41025E-64 | - |
| CDD | cd00201 | WW | 21 | 49 | 0.00796503 | IPR001202 |
| Pfam | PF00397 | WW domain | 20 | 50 | 3.5E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 178 | 348 | 1.0E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 385 | 493 | 2.0E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 226 | 509 | 1.58E-73 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 51 | 1.42E-7 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 15 | 59 | 2.9E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 129 | 363 | 1.5E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 364 | 534 | 1.7E-59 | IPR027417 |
| SMART | SM00456 | ww_5 | 19 | 52 | 5.6E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 409 | 493 | 3.9E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 173 | 376 | 1.5E-62 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 10.955 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 154 | 182 | 10.552991 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 388 | 532 | 25.725975 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 185 | 359 | 29.522181 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 305 | 313 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 96 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021733054.1 | ATP-dependent RNA helicase-like protein DB10 [Chenopodium quinoa] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NBD2 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology