Basic Information
Locus ID:
Sbi_jg19126
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
FDH1
Description:
Catalyzes the NAD( )-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000025l | 23938282 | 23943828 | - | Sbi_jg19126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 42,491.16 Da | 27.89 | 86.17 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05302 | FDH | 38 | 385 | 0.0 | IPR033689 |
| Pfam | PF02826 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 164 | 342 | 7.7E-49 | IPR006140 |
| Pfam | PF00389 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | 73 | 368 | 1.6E-14 | IPR006139 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 157 | 343 | 7.79E-52 | IPR036291 |
| SUPERFAMILY | SSF52283 | Formate/glycerate dehydrogenase catalytic domain-like | 50 | 175 | 7.94E-44 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 154 | 344 | 3.4E-162 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 39 | 382 | 3.4E-162 | - |
| ProSitePatterns | PS00671 | D-isomer specific 2-hydroxyacid dehydrogenases signature 3. | 281 | 297 | - | IPR029753 |
| ProSitePatterns | PS00065 | D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. | 202 | 229 | - | IPR029752 |
| ProSitePatterns | PS00670 | D-isomer specific 2-hydroxyacid dehydrogenases signature 2. | 252 | 274 | - | IPR029753 |
| Hamap | MF_03210 | Formate dehydrogenase, mitochondrial. | 38 | 386 | 58.611305 | IPR033689 |
Gene Ontology
KEGG Pathway
Pathway:
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko00680 (Methane metabolism)
map00680 (Methane metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14780.1 | formate dehydrogenase. Encodes a NAD-dependent formate dehydrogenase. | 0 |
| RefSeq | XP_010694918.1 | formate dehydrogenase 1, mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| Q07511 | Formate dehydrogenase, mitochondrial OS=Solanum tuberosum OX=4113 GN=FDH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0J8BAX7 | Formate dehydrogenase, mitochondrial OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g096300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17799 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12713 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030137 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19126, Sbi_jg37548 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5389 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012453 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl22025, Sgl22142, Sgl27286, Sgl27400 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005312, gene:ENSEOMG00000034761 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016150, CQ.Regalona.r1.7BG0019470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022270 |
| Apiaceae | Apium graveolens | 1 | Ag9G00485 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G009860, COCNU_13G000820 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701979, gene-LOC103705850, gene-LOC120113313 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2782.V1.1, AsparagusV1_01.2783.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G01021 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G14780.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012160m.g.v1.0, Thhalv10013803m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g30980.v2.2, Sp6g29260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g048000.2N, BniB05g023760.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1055, Ceq02G1816 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1096, Cgl02G1895 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g03390 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-10314, nbisL1-mrna-12307, nbisL1-mrna-6832 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.389 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027872 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23151, Lb4G24158 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.1462, AH07.3170, BH06.1477, BH07.3001, CH06.1614 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0520330, gene-QOZ80_6BG0472440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0676800.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024678, gene-QYE76_029710 |
| Poaceae | Oryza coarctata | 4 | Oco11G008800, Oco11G008810, Oco11G008890, Oco12G008840 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g29180.1, LOC_Os06g29220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G249800, gene-BS78_10G149700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0403923, Pt_Chr0403963 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G005670, Chr21G006380 |
| Poaceae | Thinopyrum elongatum | 4 | Tel4E01G022100, Tel4E01G022200, Tel6E01G502900 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4BG010280, gene_TRIDC5BG059530 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS4B02G066400.1, TraesCS4D02G007200.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb053990_P001, Zm00001eb109380_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43776 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31862 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1362, evm.TU.LG14.649 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05210 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_6_RagTag.165, evm.TU.Scaffold_6_RagTag.168 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14982 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-647 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-137 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.115 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006881 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11859 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17434 |
| Salicaceae | Populus euphratica | 1 | populus_peu26953 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621519 |
| Solanaceae | Solanum chilense | 1 | SOLCI003448200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011544 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23210_chr05_-, gene_13828 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2232 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07210.v3.1 |