Basic Information
Locus ID:
Sbi_jg19120
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000025l | 23882548 | 23888099 | - | Sbi_jg19120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 54,197.21 Da | 37.70 | 110.46 | 0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 38 | 439 | 2.0E-35 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 16 | 481 | 1.31E-65 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 20 | 486 | 3.2E-83 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 477 | 41.408047 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 353 | 368 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021773848.1 | organic cation/carnitine transporter 7-like [Chenopodium quinoa] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LVU6 | MFS domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology