Basic Information
Locus ID:
Sbi_jg18675
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000025l | 16823426 | 16843625 | + | Sbi_jg18675 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 32,126.89 Da | 59.10 | 77.88 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 95 | 145 | 2.11624E-22 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 97 | 143 | 4.9E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 94 | 157 | 1.61E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 158 | 6.9E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 97 | 143 | 4.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 97 | 144 | 12.25323 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 112 | 121 | - | IPR017907 |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_010695001.2 | E3 ubiquitin-protein ligase RMA3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BD21 | RING-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g096870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology