Basic Information
Locus ID:
Sbi_jg18412
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000025l | 10684917 | 10695495 | - | Sbi_jg18412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 82,336.33 Da | 37.67 | 89.87 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 39 | 338 | 8.79885E-159 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 355 | 655 | 6.3205E-146 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 360 | 651 | 1.2E-22 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 39 | 338 | 2.43E-37 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 354 | 655 | 9.94E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 38 | 338 | 1.9E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 353 | 656 | 8.0E-43 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 355 | 656 | 32.965233 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 39 | 339 | 30.715967 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 730 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021759066.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Chenopodium quinoa] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RMD6 | glycerophosphodiester phosphodiesterase OS=Spinacia oleracea OX=3562 GN=SOVF_050330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology