Basic Information
Locus ID:
Sbi_jg18172
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
COBW domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000025l | 3662030 | 3682078 | - | Sbi_jg18172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 52,905.43 Da | 40.91 | 75.13 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02492 | CobW/HypB/UreG, nucleotide-binding domain | 351 | 442 | 4.6E-13 | IPR003495 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 352 | 459 | 2.28E-5 | IPR027417 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 157 | 245 | 8.34E-8 | IPR038765 |
| Gene3D | G3DSA:3.40.50.300 | - | 332 | 463 | 1.1E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 119 | 249 | 1.8E-5 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15730.1 | Cobalamin biosynthesis CobW-like protein. | 0 |
| RefSeq | XP_010691087.2 | P-loop guanosine triphosphatase YjiA [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803LMW5 | CobW C-terminal domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 103 | Sbi_jg1018, Sbi_jg1323, Sbi_jg14120, Sbi_jg14340, Sbi_jg3658 ... |