Basic Information
Locus ID:
Sbi_jg18035
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 116211907 | 116218565 | + | Sbi_jg18035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 96,706.00 Da | 42.84 | 78.09 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 404 | 459 | 1.65882E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 468 | 824 | 4.7E-33 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 408 | 460 | 6.8E-9 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 400 | 460 | 4.98E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 287 | 827 | 3.82E-76 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 75 | 241 | 2.3E-47 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 272 | 376 | 7.8E-14 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 402 | 844 | 1.9E-218 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 622 | 793 | 1.9E-218 | - |
| SMART | SM00298 | chromo_7 | 403 | 462 | 1.4E-9 | IPR000953 |
| SMART | SM00439 | BAH_4 | 137 | 256 | 6.7E-16 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 472 | 823 | 2.0E-29 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 137 | 256 | 16.358295 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 404 | 460 | 12.086901 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 288 | 834 | 44.639576 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 427 | 447 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 563 | 576 | 6.6E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 517 | 531 | 6.6E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 289 | 305 | 6.6E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 72 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010673524.2 | DNA (cytosine-5)-methyltransferase CMT3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R7E9 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_103070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology