Basic Information
Locus ID:
Sbi_jg17883
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 113841833 | 113842972 | - | Sbi_jg17883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 44,204.48 Da | 35.51 | 81.98 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 218 | 308 | 1.2E-6 | IPR006527 |
| Pfam | PF00646 | F-box domain | 14 | 51 | 7.3E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 74 | 7.59E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 55 | 3.6E-9 | - |
| SMART | SM00256 | fbox_2 | 17 | 58 | 2.0E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 107 | 306 | 7.3E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 57 | 10.901672 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12855.1 | F-box family protein. | 0 |
| RefSeq | XP_010673686.1 | F-box protein At3g07870 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LPW4 | Putative F-box protein At1g12855 OS=Arabidopsis thaliana OX=3702 GN=At1g12855 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0K9R4C1 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_113500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10001 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17883, Sbi_jg62512 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1088 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007155 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59201 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001810, CQ.Regalona.r1.4BG0001880 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005517 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.674 |
| Solanaceae | Solanum chilense | 1 | SOLCI005962200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030802 |