halophFGD

Basic Information

Locus ID: Sbi_jg17794

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000015l	112180153	112183546	+	Sbi_jg17794

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.42	35,089.24 Da	59.71	71.78	-0.63

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	132	166	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	105	120	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	105	180	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62350.3	-
RefSeq	XP_021720347.1	uncharacterized protein LOC110687990 [Chenopodium quinoa]
Swiss-Prot	Q1PFH7	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1
TrEMBL	A0A540MUL0	Pentatricopeptide repeat-containing protein OS=Malus baccata OX=106549 GN=C1H46_012537 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	3	gene_22859, gene_3677, gene_6214
Amaranthaceae	Atriplex hortensis	3	Ah006596, Ah026904, Ah033066
Amaranthaceae	Salicornia bigelovii	69	Sbi_jg10574, Sbi_jg13161, Sbi_jg14289, Sbi_jg1461, Sbi_jg387 ... Sbi_jg14856, Sbi_jg15414, Sbi_jg15892, Sbi_jg16038, Sbi_jg16039, Sbi_jg17017, Sbi_jg17794, Sbi_jg18859, Sbi_jg20587, Sbi_jg20588, Sbi_jg20867, Sbi_jg21189, Sbi_jg21625, Sbi_jg21647, Sbi_jg24890, Sbi_jg25766, Sbi_jg25953, Sbi_jg2664, Sbi_jg27245, Sbi_jg27641, Sbi_jg28233, Sbi_jg28910, Sbi_jg28911, Sbi_jg29061, Sbi_jg29112, Sbi_jg29611, Sbi_jg31906, Sbi_jg32112, Sbi_jg33156, Sbi_jg33231, Sbi_jg35307, Sbi_jg36910, Sbi_jg36911, Sbi_jg37659, Sbi_jg37848, Sbi_jg38014, Sbi_jg38932, Sbi_jg39378, Sbi_jg42150, Sbi_jg44837, Sbi_jg45166, Sbi_jg47353, Sbi_jg48179, Sbi_jg48916, Sbi_jg49321, Sbi_jg49402, Sbi_jg49989, Sbi_jg51529, Sbi_jg52012, Sbi_jg52446, Sbi_jg53066, Sbi_jg58931, Sbi_jg59606, Sbi_jg59607, Sbi_jg59648, Sbi_jg59926, Sbi_jg61368, Sbi_jg6157, Sbi_jg62907, Sbi_jg62959, Sbi_jg62967, Sbi_jg6306, Sbi_jg63114, Sbi_jg9987
Amaranthaceae	Salicornia europaea	2	Seu_jg15751, Seu_jg21945
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00026342
Apiaceae	Apium graveolens	1	Ag9G00627
Plumbaginaceae	Limonium bicolor	2	Lb2G10686, Lb3G16601
Poaceae	Oryza coarctata	2	Oco13G014430, Oco16G012190
Solanaceae	Lycium barbarum	3	gene-LOC132599869, gene-LOC132609715, gene-LOC132622063
Solanaceae	Solanum chilense	2	SOLCI003030300, SOLCI005764100
Solanaceae	Solanum pennellii	3	gene-LOC114074771, gene-LOC114075281, gene-LOC114078436