Basic Information
Locus ID:
Sbi_jg17585
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 108884955 | 108887106 | - | Sbi_jg17585 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 30,616.51 Da | 38.31 | 87.83 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 13 | 238 | 8.6E-72 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 9 | 262 | 1.44E-83 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 4 | 269 | 8.8E-83 | IPR012334 |
| SMART | SM00710 | pbh1 | 73 | 94 | 53.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 96 | 116 | 4900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 155 | 176 | 7400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 46 | 72 | 720.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 126 | 147 | 0.61 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 103 | 116 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56710.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010674532.2 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RUV7 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_025850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology