Basic Information
Locus ID:
Sbi_jg17543
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 108312921 | 108317115 | + | Sbi_jg17543 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 52,938.38 Da | 35.95 | 80.74 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 148 | 468 | 7.33E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 152 | 470 | 7.6E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 284 | 324 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 371 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 235 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 147 | 188 | 27.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 333 | 9.439068 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 311 | 325 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80710.1 | DROUGHT SENSITIVE 1. Encodes a WD40 repeat family protein containing a DWD (DDB1 binding WD40) motif. Mutant analysis demonstrates that DRS1 promotes tolerance to drought stress, possibly mediated by ABA, and suggests involvement of DDB1 Cul4mediated protein degradation in drought response. | 0 |
| RefSeq | XP_021837722.1 | WD repeat-containing protein 76 [Spinacia oleracea] | 0 |
| A3LWH8 | DNA damage-binding protein CMR1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRW1 PE=3 SV=2 | 0 | |
| TrEMBL | A0A7C9DG38 | WD_REPEATS_REGION domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31573 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_10565, gene_10566, gene_5279 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005932 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g006430 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg16941, Sbi_jg17543, Sbi_jg2329, Sbi_jg34179 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg218, Seu_jg2438, Seu_jg791, Seu_jg792 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008294 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24709, Sgl25350, Sgl29862, Sgl30525 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008388, gene:ENSEOMG00000028509 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009420, CQ.Regalona.r1.4BG0009560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179380 |
| Apiaceae | Apium graveolens | 2 | Ag2G00445, Ag2G00446 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G003820 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696390 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.90.V1.1, AsparagusV1_04.1084.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G05841, Ftri5G22379 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018400m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35040.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB04g020320.2N, BniB06g068240.2N, BniB06g068250.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2512 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2649 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09670 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0241s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06380 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.214, evm.TU.LG07.219 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000940 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G21544, Lb4G21545, Lb4G26411 |
| Poaceae | Echinochloa crus-galli | 7 | AH08.1086, AH08.1093, BH08.1034, BH08.1037, BH08.1039 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625000, gene-QOZ80_8BG0653680 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0189360.1, HORVU.MOREX.r3.7HG0640440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032205 |
| Poaceae | Oryza coarctata | 2 | Oco15G005640, Oco16G005420 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g18150.1, LOC_Os08g18880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G086400 |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0201779, Pt_Chr0206176, Pt_Chr0206178, Pt_Chr0206179 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr16G012190, Chr17G011580, Chr17G011590, Chr20G008570 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G704100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG013110, gene_TRIDC2AG059600 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G091700.1, TraesCS1A02G121100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb028210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49443 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22764, Zma_g23872, Zma_g23874 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.1115, evm.TU.LG05.1657, evm.TU.LG18.1156 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g24000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.150 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13936 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21263 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16583 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.94 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015100 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16675 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14539 |
| Salicaceae | Populus euphratica | 1 | populus_peu05635 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622142, gene-LOC132632356 |
| Solanaceae | Solanum chilense | 1 | SOLCI003919700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009017 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9036 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1103 |