Basic Information
Locus ID:
Sbi_jg17479
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 107382901 | 107384355 | - | Sbi_jg17479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 55,811.05 Da | 44.87 | 73.91 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 189 | 254 | 2.1E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 319 | 1.53E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 257 | 1.39E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 197 | 5.01E-14 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 253 | 483 | 2.1E-34 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 203 | 2.1E-11 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 188 | 254 | 8.5E-23 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 118 | 320 | 35.816696 | IPR044066 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010679272.2 | probable E3 ubiquitin-protein ligase ARI5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RW54 | RBR-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_022340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg17479, Sbi_jg62121, Sbi_jg62122 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg735 |