Basic Information
Locus ID:
Sbi_jg17232
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 103210726 | 103231240 | + | Sbi_jg17232 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 76,293.12 Da | 45.47 | 81.44 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 423 | 556 | 4.58373E-65 | - |
| CDD | cd17920 | DEXHc_RecQ | 225 | 422 | 1.18807E-95 | - |
| Pfam | PF16124 | RecQ zinc-binding | 559 | 625 | 1.3E-9 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 439 | 546 | 1.5E-15 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 233 | 399 | 1.6E-16 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 270 | 567 | 5.97E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 423 | 628 | 5.2E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 190 | 422 | 1.2E-82 | IPR027417 |
| SMART | SM00490 | helicmild6 | 465 | 547 | 4.7E-21 | IPR001650 |
| SMART | SM00487 | ultradead3 | 227 | 431 | 2.1E-25 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 225 | 627 | 1.9E-147 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 437 | 590 | 18.909176 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 239 | 415 | 19.663538 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 165 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021742657.1 | ATP-dependent DNA helicase Q-like 1 [Chenopodium quinoa] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ50 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology