Basic Information
Locus ID:
Sbi_jg17198
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 102655517 | 102668205 | + | Sbi_jg17198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 121,376.69 Da | 37.52 | 83.14 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 483 | 0.0076 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 878 | 911 | 0.029 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 331 | 525 | 2.38E-22 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 746 | 1060 | 9.02E-29 | IPR011047 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 465 | 916 | 3.14E-41 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 298 | 539 | 9.6E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 540 | 673 | 2.1E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 699 | 925 | 4.0E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 926 | 1069 | 3.8E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 829 | 869 | 8.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 618 | 659 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 872 | 911 | 7.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 961 | 1003 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 0.5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.5E-13 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1017 | 1058 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 436 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 0.72 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 240.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 879 | 914 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 593 | 624 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 492 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.359221 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 879 | 920 | 12.981398 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 898 | 912 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021742617.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIJ6 | Topless-related protein 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_060520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology