halophFGD

Basic Information

Locus ID: Sbi_jg17163

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: F-box kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000015l	101889916	101893718	-	Sbi_jg17163

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.76	37,383.03 Da	33.47	92.45	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	29	66	1.4E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	27	89	2.75E-10	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	28	65	5.2E-6	-
SMART	SM00256	fbox_2	28	69	0.0067	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G23880.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_021846574.1	F-box protein At4g22390-like [Spinacia oleracea]
Swiss-Prot	Q9LIR8	F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1
TrEMBL	A0A0K9R046	F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_121230 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	13	Ah001920, Ah003798, Ah004407, Ah004408, Ah004409, Ah008157 ... Ah010458, Ah010828, Ah010831, Ah022482, Ah032943, Ah038021, Ah038025
Amaranthaceae	Beta vulgaris	2	BVRB_9g204180, BVRB_9g219200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17163, Sbi_jg27532, Sbi_jg52462, Sbi_jg61771
Amaranthaceae	Salicornia europaea	3	Seu_jg20871, Seu_jg423, Seu_jg7781
Amaranthaceae	Suaeda aralocaspica	11	GOSA_00000873, GOSA_00000881, GOSA_00011522, GOSA_00011523 ... GOSA_00013418, GOSA_00015200, GOSA_00015210, GOSA_00017501, GOSA_00019733, GOSA_00019734, GOSA_00019739
Amaranthaceae	Suaeda glauca	22	Sgl11782, Sgl17271, Sgl24939, Sgl30083, Sgl33301, Sgl38521 ... Sgl38541, Sgl38559, Sgl45548, Sgl45549, Sgl45550, Sgl45552, Sgl50333, Sgl50335, Sgl50336, Sgl78539, Sgl78553, Sgl78621, Sgl78622, Sgl81029, Sgl81099, Sgl81100
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000016276, gene:ENSEOMG00000021311 ... gene:ENSEOMG00000025450, gene:ENSEOMG00000032638, gene:ENSEOMG00000035631, gene:ENSEOMG00000037957, gene:ENSEOMG00000038425, gene:ENSEOMG00000039745, gene:ENSEOMG00000051485, gene:ENSEOMG00000051554
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.3BG0025960, CQ.Regalona.r1.3BG0025970 ... CQ.Regalona.r1.4AG0010490, CQ.Regalona.r1.4BG0020100, CQ.Regalona.r1.4BG0020110, CQ.Regalona.r1.5AG0016500, CQ.Regalona.r1.5AG0016510, CQ.Regalona.r1.5BG0001640, CQ.Regalona.r1.5BG0017780, CQ.Regalona.r1.5BG0020740, CQ.Regalona.r1.7BG0009400, CQ.Regalona.r1.7BG0009410, CQ.Regalona.r1.9AG0013250, CQ.Regalona.r1.9AG0015130, CQ.Regalona.r1.9AG0015140
Poaceae	Lolium multiflorum	1	gene-QYE76_057782