Basic Information
Locus ID:
Sbi_jg17078
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 100333818 | 100339010 | + | Sbi_jg17078 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 100,624.16 Da | 54.20 | 48.11 | -1.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 413 | 440 | 2.7E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 379 | 407 | 2.3E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 372 | 408 | 2.28E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 371 | 409 | 5.6E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 410 | 441 | 2.4E-8 | - |
| SMART | SM00547 | zf_4 | 381 | 405 | 2.9E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 414 | 438 | 2.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 412 | 441 | 9.450083 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 379 | 408 | 10.274413 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 383 | 402 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 416 | 435 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 777 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 793 | 831 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R1A6 | RanBP2-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology