Basic Information
Locus ID:
Sbi_jg17019
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 98906787 | 98907671 | - | Sbi_jg17019 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 33,657.29 Da | 40.25 | 85.48 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 128 | 171 | 8.50333E-19 | - |
| Pfam | PF13639 | Ring finger domain | 128 | 171 | 2.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 124 | 175 | 2.52E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 176 | 6.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 129 | 170 | 7.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 171 | 12.459772 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_021742845.1 | E3 ubiquitin-protein ligase ATL31-like [Chenopodium quinoa] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R620 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_102710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17018, Sbi_jg17019, Sbi_jg61568, Sbi_jg61569 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg298, Seu_jg299 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008347 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0009140 |