halophFGD

Basic Information

Locus ID: Sbi_jg17016

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: RING-H2 zinc finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000015l	98814535	98819192	+	Sbi_jg17016

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.98	43,720.69 Da	32.83	74.85	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	92	135	2.54247E-19	-
Pfam	PF13639	Ring finger domain	92	135	1.5E-12	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	86	141	1.81E-19	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	57	140	3.9E-21	IPR013083
SMART	SM00184	ring_2	93	134	4.2E-5	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	93	135	12.577796	IPR001841

KEGG Pathway

KO Term:

K10664 (E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT4G09100.1	RING/U-box superfamily protein.
RefSeq	XP_021735163.1	uncharacterized protein LOC110701862 [Chenopodium quinoa]
Swiss-Prot	Q9M0R7	RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1
TrEMBL	A0A0J8BBH2	RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g094420 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	3	Ah006594, Ah020201, Ah021231
Amaranthaceae	Salicornia bigelovii	130	Sbi_jg10182, Sbi_jg10288, Sbi_jg10290, Sbi_jg10359 ... Sbi_jg10360, Sbi_jg10361, Sbi_jg10575, Sbi_jg13553, Sbi_jg13556, Sbi_jg14290, Sbi_jg1460, Sbi_jg14855, Sbi_jg15011, Sbi_jg15023, Sbi_jg15413, Sbi_jg15457, Sbi_jg15893, Sbi_jg16040, Sbi_jg16182, Sbi_jg16785, Sbi_jg16786, Sbi_jg16840, Sbi_jg17016, Sbi_jg175, Sbi_jg17793, Sbi_jg18132, Sbi_jg18475, Sbi_jg18690, Sbi_jg19494, Sbi_jg19524, Sbi_jg20412, Sbi_jg20589, Sbi_jg20703, Sbi_jg20707, Sbi_jg20866, Sbi_jg21188, Sbi_jg21581, Sbi_jg21646, Sbi_jg22224, Sbi_jg23665, Sbi_jg25765, Sbi_jg25952, Sbi_jg2703, Sbi_jg27045, Sbi_jg27220, Sbi_jg27244, Sbi_jg27565, Sbi_jg27642, Sbi_jg28292, Sbi_jg28402, Sbi_jg28912, Sbi_jg29062, Sbi_jg29128, Sbi_jg29129, Sbi_jg29612, Sbi_jg29694, Sbi_jg2976, Sbi_jg31054, Sbi_jg32111, Sbi_jg32918, Sbi_jg33155, Sbi_jg33230, Sbi_jg35308, Sbi_jg35410, Sbi_jg36908, Sbi_jg36909, Sbi_jg37849, Sbi_jg37902, Sbi_jg38013, Sbi_jg38802, Sbi_jg38933, Sbi_jg39284, Sbi_jg39313, Sbi_jg39376, Sbi_jg39421, Sbi_jg39422, Sbi_jg41735, Sbi_jg41966, Sbi_jg42011, Sbi_jg42037, Sbi_jg42335, Sbi_jg43616, Sbi_jg44440, Sbi_jg4452, Sbi_jg448, Sbi_jg44832, Sbi_jg44838, Sbi_jg45108, Sbi_jg45119, Sbi_jg45165, Sbi_jg46020, Sbi_jg47119, Sbi_jg47250, Sbi_jg47354, Sbi_jg47839, Sbi_jg48914, Sbi_jg48954, Sbi_jg49967, Sbi_jg49988, Sbi_jg50368, Sbi_jg5039, Sbi_jg52013, Sbi_jg52408, Sbi_jg53067, Sbi_jg5423, Sbi_jg56580, Sbi_jg56756, Sbi_jg57163, Sbi_jg57857, Sbi_jg57858, Sbi_jg58821, Sbi_jg58869, Sbi_jg58930, Sbi_jg59459, Sbi_jg59647, Sbi_jg59652, Sbi_jg60832, Sbi_jg60861, Sbi_jg61079, Sbi_jg6156, Sbi_jg61937, Sbi_jg61938, Sbi_jg62693, Sbi_jg62968, Sbi_jg63113, Sbi_jg6350, Sbi_jg6494, Sbi_jg8798, Sbi_jg9988, Sbi_m1-g11809
Amaranthaceae	Salicornia europaea	2	Seu_jg3014, Seu_jg6387
Amaranthaceae	Suaeda aralocaspica	10	GOSA_00013683, GOSA_00016161, GOSA_00016589, GOSA_00016594 ... GOSA_00018560, GOSA_00018597, GOSA_00020584, GOSA_00024355, GOSA_00024818, GOSA_00029371