Basic Information
Locus ID:
Sbi_jg17004
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 98578822 | 98604096 | + | Sbi_jg17004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 55,050.12 Da | 43.66 | 85.67 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 396 | 439 | 2.04974E-18 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 207 | 250 | 3.13317E-19 | - |
| Pfam | PF13639 | Ring finger domain | 396 | 439 | 1.4E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 207 | 250 | 2.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 396 | 446 | 2.66E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 256 | 4.54E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 255 | 1.4E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 358 | 444 | 1.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 208 | 249 | 4.4E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 397 | 438 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 208 | 250 | 11.987676 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 397 | 439 | 12.135206 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_021836519.1 | putative RING-H2 finger protein ATL35 [Spinacia oleracea] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KPD1 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 11 | Sbi_jg17004, Sbi_jg1992, Sbi_jg24138, Sbi_jg25582 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg16600, Seu_jg3296, Seu_jg4963 |