Basic Information
Locus ID:
Sbi_jg16808
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 92249480 | 92255051 | + | Sbi_jg16808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 30,383.92 Da | 27.55 | 65.22 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 15 | 269 | 3.4E-85 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 149 | 259 | 3.73E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 152 | 272 | 1.5E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 158 | 260 | 23.909512 | IPR000270 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 31 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 119 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_021848871.1 | auxin-responsive protein IAA16-like [Spinacia oleracea] | 0 |
| P13089 | Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2R4K3H3 | Auxin-responsive protein OS=Bassia scoparia OX=83154 GN=IAA16 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology