Basic Information
Locus ID:
Sbi_jg1600
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000007l | 60757508 | 60760637 | + | Sbi_jg1600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 101,571.72 Da | 36.84 | 103.78 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 72 | 6.3E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 126 | 146 | 1.1 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 689 | 920 | 5.6E-16 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 510 | 569 | 2.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 294 | 351 | 2.6E-8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 81 | 426 | 9.42E-64 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 681 | 921 | 3.32E-33 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 366 | 600 | 4.25E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 283 | 4.1E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 388 | 605 | 7.2E-53 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 678 | 742 | 8.8E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 743 | 925 | 8.7E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 181 | 2.4E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 284 | 387 | 9.0E-27 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 268 | 291 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 124 | 148 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 365 | 388 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 532 | 556 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 340 | 363 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 196 | 220 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 292 | 315 | 13.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 644 | 926 | 18.294355 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 294 | 317 | 7.365424 | IPR001611 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 783 | 795 | - | IPR008266 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51350.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_021850563.1 | leucine-rich repeat receptor-like protein kinase TDR [Spinacia oleracea] | 0 |
| Q9FII5 | Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q7K8 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_211450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8913 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014172 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g172330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1600, Sbi_jg34960 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3150 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003349 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72772, Sgl76310 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009288, gene:ENSEOMG00000033946 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023440, CQ.Regalona.r1.8BG0018920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179450 |
| Apiaceae | Apium graveolens | 1 | Ag2G00449 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G00365, Ftri7G17717 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G51350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005775m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g06380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g070710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2507 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2644 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-272 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.175 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015559 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31990 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1111, evm.TU.LG05.1654 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.154 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13939 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21260 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16586 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.96 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014990 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16673 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14542 |
| Salicaceae | Populus euphratica | 2 | populus_peu05639, populus_peu12278 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603054 |
| Solanaceae | Solanum chilense | 1 | SOLCI000899100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025774 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12325_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1097 |