Basic Information
Locus ID:
Sbi_jg15862
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 28786187 | 28810371 | - | Sbi_jg15862 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 96,541.53 Da | 35.02 | 83.05 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 462 | 513 | 4.0E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 266 | 321 | 9.7E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 530 | 572 | 1.5E-7 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 729 | 849 | 2.29E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 517 | 574 | 3.09E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 604 | 657 | 2.67E-6 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 523 | 581 | 1.1E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 601 | 662 | 4.6E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 530 | 571 | 3.6E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 603 | 660 | 3.5E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 601 | 662 | 8.7157 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 528 | 573 | 10.104099 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 531 | 570 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 604 | 659 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 422 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010684186.1 | uncharacterized protein LOC104898779 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RIM7 | Increased DNA methylation 1 OS=Spinacia oleracea OX=3562 GN=SOVF_067560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology