Basic Information
Locus ID:
Sbi_jg15770
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ubiquitinyl hydrolase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 24160721 | 24190749 | + | Sbi_jg15770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 68,678.68 Da | 47.18 | 82.88 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 314 | 518 | 7.5E-39 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 312 | 500 | 1.31E-49 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 306 | 550 | 2.6E-56 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 314 | 608 | 25.726341 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 315 | 330 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021769581.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9S241 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_009050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology