Basic Information
Locus ID:
Sbi_jg15234
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
mediator of RNA polymerase II transcription subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 9353780 | 9380060 | + | Sbi_jg15234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 91,843.43 Da | 64.71 | 69.84 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11265 | Mediator complex subunit 25 von Willebrand factor type A | 4 | 230 | 4.1E-40 | IPR021419 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 852 | - | - |
| Coils | Coil | Coil | 681 | 708 | - | - |
| Coils | Coil | Coil | 749 | 779 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25540.1 | phytochrome and flowering time regulatory protein (PFT1). Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense. | 0 |
| RefSeq | XP_021721692.1 | mediator of RNA polymerase II transcription subunit 25-like isoform X3 [Chenopodium quinoa] | 0 |
| A0A3Q7JC00 | Mediator of RNA polymerase II transcription subunit 25 OS=Solanum lycopersicum OX=4081 GN=MED25 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LM81 | Mediator of RNA polymerase II transcription subunit 25 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5291 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15853 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019367 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g057020 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg15234, Sbi_jg22743, Sbi_jg41105, Sbi_jg56045 ... |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26528 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006312, GOSA_00018897 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01732, Sgl06886, Sgl34142, Sgl34375, Sgl39778 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013339, gene:ENSEOMG00000032646 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009770, CQ.Regalona.r1.3BG0009930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225680 |
| Apiaceae | Apium graveolens | 1 | Ag8G02046 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G008260 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708191 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1030.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA30850 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G25540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006778m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g22670.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g018400.2N, BniB04g040660.2N, BniB04g040670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2043 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2182 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g07770 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate07g21030, gene.Thate07g21040 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.512 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027409 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01480 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1495, BH03.1674, CH03.1814 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_6AG0531550, gene-QOZ80_6AG0531580 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004414, gene-QYE76_004449 |
| Poaceae | Oryza coarctata | 2 | Oco17G002240, Oco18G002160 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g13610.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G145500, gene-BS78_05G204500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702682 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G012270, Chr10G012280, Chr11G009890, Chr14G012100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G304400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG029240, gene_TRIDC5BG030780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G179400.2, TraesCS5B02G177300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb097890_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35503 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32354 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1410, evm.TU.LG07.1471 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g22870 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_15_RagTag.109, evm.TU.Scaffold_15_RagTag.110 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2964, nbisL1-mrna-3903 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17441 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000013l.196, evm.TU.utg000001l.63 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004671 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10915, nbisL1-mrna-11659 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23128, nbisL1-mrna-2827 |
| Salicaceae | Populus euphratica | 2 | populus_peu07036, populus_peu20994 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616589, gene-LOC132641817 |
| Solanaceae | Solanum chilense | 1 | SOLCI005537500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007204, gene-LOC107020849 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19515_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0234, TC04G0235 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32020.v3.1, Zosma04g19140.v3.1 |