Basic Information
Locus ID:
Sbi_jg15119
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 7051035 | 7053823 | + | Sbi_jg15119 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 40,568.79 Da | 50.75 | 77.11 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 307 | 350 | 3.9E-12 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 148 | 211 | 4.9E-6 | IPR032872 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 19 | 76 | 5.5E-12 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 300 | 353 | 2.37E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 268 | 355 | 4.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 308 | 349 | 3.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 308 | 350 | 12.312242 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010671483.2 | putative RING-H2 finger protein ATL21B [Beta vulgaris subsp. vulgaris] | 0 |
| P0CH02 | Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2N9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology